Syllabus ( MBG 423 )
|
Basic information
|
|
Course title: |
Molecular Mechanisms of Epigenetics |
Course code: |
MBG 423 |
Lecturer: |
Assist. Prof. Abu Musa Md Talimur REZA
|
ECTS credits: |
5 |
GTU credits: |
3 (3-0-0) |
Year, Semester: |
4, Spring |
Level of course: |
First Cycle (Undergraduate) |
Type of course: |
Elective
|
Language of instruction: |
English
|
Mode of delivery: |
Face to face
|
Pre- and co-requisites: |
Genetics (MBG 221), Genetics Laboratory (MBG 223), Molecular Genetics I ( MBG 222), Molecular Genetics II (MBG 324) |
Professional practice: |
No |
Purpose of the course: |
Epigenetics course will provide a rigorous foundation in the area of epigenetics (stable phenotypic changes without alterations in DNA sequence). |
|
|
|
Learning outcomes
|
|
Upon successful completion of this course, students will be able to:
-
Differentiate between genetic inheritance and epigenetic inheritance.
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define life forms and their relationship with their environment.
-
To be able to comprehend the history and nature of scientific thinking and to apply them to problems in the field.
Method of assessment
-
Written exam
-
Homework assignment
-
Explain the role of epigenetics in the organization and structure of chromatin.
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define life forms and their relationship with their environment.
-
To be able to drive hypotheses using existing knowledge, designing and conducting experiment for problem solving and make correct interpretation of the results obtained from the experiment.
Method of assessment
-
Written exam
-
Homework assignment
-
Explain the role of different molecular factors in the epigenetic regulation.
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define the structure-function relationship at the molecular level in cells and organisms.
-
To be able to define life forms and their relationship with their environment.
Method of assessment
-
Written exam
-
Homework assignment
-
Describe the role of epigenetics in reprograming
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define the structure-function relationship at the molecular level in cells and organisms.
-
To be able to define life forms and their relationship with their environment.
Method of assessment
-
Written exam
-
Homework assignment
-
Explain the role of epigenetics in the regulation of morphogenesis and tissue specification
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define the structure-function relationship at the molecular level in cells and organisms.
-
To be able to define life forms and their relationship with their environment.
-
To be able to follow current scientific and technological innovations with the awareness of continuous learning and to apply them in the field.
Method of assessment
-
Written exam
-
Homework assignment
-
Explain how does the epigenetic memories are transferred to the next generations.
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define the structure-function relationship at the molecular level in cells and organisms.
-
To be able to explain the genetic information flow in organisms and populations.
-
To be able to define life forms and their relationship with their environment.
Method of assessment
-
Written exam
-
Homework assignment
-
Explain the connection between epigenetic changes and diseases.
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define the structure-function relationship at the molecular level in cells and organisms.
-
To be able to define life forms and their relationship with their environment.
-
To be able to work individually, make independent decisions and participate actively in multidisciplinary group studies.
-
To be able to apply biological concepts to individual, social, economic, technologic and environmental issues and to develop sustainable approaches for problem solving.
Method of assessment
-
Written exam
-
Homework assignment
-
Describe how epigenetic markers could be used for diagnosis and treatment of diseases
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to define life forms and their relationship with their environment.
-
To be able to follow current scientific and technological innovations with the awareness of continuous learning and to apply them in the field.
-
To be able to drive hypotheses using existing knowledge, designing and conducting experiment for problem solving and make correct interpretation of the results obtained from the experiment.
-
To be able to apply biological concepts to individual, social, economic, technologic and environmental issues and to develop sustainable approaches for problem solving.
Method of assessment
-
Written exam
-
Homework assignment
-
Identify the basic techniques used for the study of epigenetics
Contribution to Program Outcomes
-
To be able to define general concepts and problems related to Molecular Biology and Genetics and to produce solutions.
-
To be able to work individually, make independent decisions and participate actively in multidisciplinary group studies.
-
To be able to follow current scientific and technological innovations with the awareness of continuous learning and to apply them in the field.
-
To be able to drive hypotheses using existing knowledge, designing and conducting experiment for problem solving and make correct interpretation of the results obtained from the experiment.
-
To be able to apply biological concepts to individual, social, economic, technologic and environmental issues and to develop sustainable approaches for problem solving.
Method of assessment
-
Written exam
-
Homework assignment
|
|
Contents
|
|
Week 1: |
Introduction and overview: epigenetic modification vs mutation, factor influences epigenetic modifications of the genome |
Week 2: |
Epigenetic memory and epigenetic states |
Week 3: |
Covalent modifications of DNA |
Week 4: |
Histone modifications |
Week 5: |
Non-coding RNAs |
Week 6: |
Polycomb-group proteins (PcG proteins) and Trithorax complex (TrxG) |
Week 7: |
Mid-term exam and X-inactivation |
Week 8: |
X-inactivation (X chromosome inactivation) (continue) |
Week 9: |
Reprogramming of highly differentiated sperm and egg nuclei into totipotency: role of epigenetics information |
Week 10: |
Epigenetic regulation of morphogenesis and tissue specification |
Week 11: |
Transgenerational epigenetic inheritance & epigenetic heterogeneity |
Week 12: |
Epigenetic Modification in human diseases |
Week 13: |
Epigenetic markers for diagnosis and drug development |
Week 14: |
Techniques used in the study of epigenetics, Homework presentation |
Week 15*: |
- |
Week 16*: |
Final exam |
Textbooks and materials: |
Handbook of Epigenetics: The New Molecular and Medical Genetics, 3rd Edition, 2022, Edited by Trygve Tollefsbol, ISBN: 9780323919098, Academic Press Publications, Elsevier Inc.
|
Recommended readings: |
1. Epigenetics (2014) by Lyle Armstrong; Published by Garland Science, Taylor & Francis Group (ISBN-13: 978-0815365112; ISBN-10: 081536511X) 2. Handbook of Epigenetics: The New Molecular and Medical Genetics, 3rd Edition, 2022, Edited by Trygve Tollefsbol, ISBN: 9780323919098, Academic Press Publications, Elsevier Inc.
|
|
* Between 15th and 16th weeks is there a free week for students to prepare for final exam.
|
|
|
|
Assessment
|
|
|
Method of assessment |
Week number |
Weight (%) |
|
Mid-terms: |
7 |
30 |
Other in-term studies: |
0 |
0 |
Project: |
0 |
0 |
Homework: |
14 |
20 |
Quiz: |
0 |
0 |
Final exam: |
16 |
50 |
|
Total weight: |
(%) |
|
|
|
Workload
|
|
|
Activity |
Duration (Hours per week) |
Total number of weeks |
Total hours in term |
|
Courses (Face-to-face teaching): |
3 |
14 |
|
Own studies outside class: |
2 |
14 |
|
Practice, Recitation: |
0 |
0 |
|
Homework: |
8 |
1 |
|
Term project: |
0 |
0 |
|
Term project presentation: |
0 |
0 |
|
Quiz: |
0 |
0 |
|
Own study for mid-term exam: |
8 |
2 |
|
Mid-term: |
2 |
1 |
|
Personal studies for final exam: |
2 |
12 |
|
Final exam: |
2 |
1 |
|
|
|
Total workload: |
|
|
|
Total ECTS credits: |
* |
|
* ECTS credit is calculated by dividing total workload by 25. (1 ECTS = 25 work hours)
|
|
|
-->