Syllabus ( BENG 463 )
|
Basic information
|
|
Course title: |
Protein Engineering |
Course code: |
BENG 463 |
Lecturer: |
Prof. Dr. Barış BİNAY
|
ECTS credits: |
5 |
GTU credits: |
3 () |
Year, Semester: |
4, Spring |
Level of course: |
First Cycle (Undergraduate) |
Type of course: |
Elective
|
Language of instruction: |
English
|
Mode of delivery: |
, Lab work
|
Pre- and co-requisites: |
None |
Professional practice: |
No |
Purpose of the course: |
This course is aimed to enable students to understand the use of site-directed mutagenesis and transformation methods in protein engineering to enable them to examine the use of the developed recombinant proteins in various fields, to enable them to follow the scientific developments about proteins, which have been intensively researched in recent years, especially various proteins and enzymes used in the food industry.
|
|
|
|
Learning outcomes
|
|
Upon successful completion of this course, students will be able to:
-
Identify the methods used in determination and analysis of recombinant proteins.
Contribution to Program Outcomes
-
Acquire knowledge on biological, chemical, physical and mathematical principles which constitute the basis of bioengineering applications
-
Convert biological, chemical, physical and mathematical principles into novel applications for the benefit of society,
-
Design processes for the investigation of bioengineering problems, collect data, analyze and interpret the results.
-
Combine, Interpret, and analyze different subfields of bioengineering
-
Develop an awareness of continuous learning in relation with modern technology.
Method of assessment
-
Written exam
-
Laboratory exercise/exam
-
Define details of the use of site-directed mutagenesis, random mutagenesis, and transformation systems in protein engineering
Contribution to Program Outcomes
-
Acquire knowledge on current bioengineering applications from the industrial and scientific aspects
-
Work effectively in multi-disciplinary research teams
-
Combine and effectively integrate knowledge acquired from different disciplines.
-
Develop an awareness of continuous learning in relation with modern technology.
Method of assessment
-
Written exam
-
Laboratory exercise/exam
-
Apply protein purification and industrial analysis.
Contribution to Program Outcomes
-
Acquire knowledge on current bioengineering applications from the industrial and scientific aspects
-
Conduct and develop bioengineering applications for relevant sectors such as health and agricultural industry.
-
Combine and effectively integrate knowledge acquired from different disciplines.
-
Demonstrate sufficiency in English to follow literature, present technical projects and write articles
Method of assessment
-
Written exam
-
Laboratory exercise/exam
|
|
Contents
|
|
Week 1: |
Introduction to Enzyme Engineering |
Week 2: |
Laboratory Safety and Devices |
Week 3: |
Primer Design for Mutation |
Week 4: |
PCR (Polymerase Chain Reaction) Application |
Week 5: |
Midterm exam-I PCR (Polymerase Chain Reaction) Application |
Week 6: |
Sequencing Technique |
Week 7: |
Transformation |
Week 8: |
Preculture Preparation and medium types |
Week 9: |
Introduction to Induction |
Week 10: |
Midterm exam-II Continuity to induction |
Week 11: |
Buffer preparation and purification techniques |
Week 12: |
SDS-PAGE Analysis |
Week 13: |
BCA Assay and Enzyme Kinetic |
Week 14: |
Combination of experiement flow |
Week 15*: |
- |
Week 16*: |
Final Exam |
Textbooks and materials: |
|
Recommended readings: |
Whitford, David. Proteins: structure and function. John Wiley & Sons, 2013. Martin, R. (Ed.). (1998). Protein synthesis: methods and protocols (Vol. 77). Totowa, NJ: Humana Press.
Cleland, J. L., & Craik, C. S. (Eds.). (1996). Protein engineering: principles and practice. Wiley-Liss.
Grant, G. A. (Ed.). (2002). Synthetic peptides: a user's guide. Oxford University Press on Demand.
|
|
* Between 15th and 16th weeks is there a free week for students to prepare for final exam.
|
|
|
|
Assessment
|
|
|
Method of assessment |
Week number |
Weight (%) |
|
Mid-terms: |
5,10 |
40 |
Other in-term studies: |
0 |
0 |
Project: |
0 |
0 |
Homework: |
0 |
0 |
Quiz: |
0 |
0 |
Final exam: |
16 |
60 |
|
Total weight: |
(%) |
|
|
|
Workload
|
|
|
Activity |
Duration (Hours per week) |
Total number of weeks |
Total hours in term |
|
Courses (Face-to-face teaching): |
3 |
14 |
|
Own studies outside class: |
3 |
14 |
|
Practice, Recitation: |
0 |
0 |
|
Homework: |
0 |
0 |
|
Term project: |
0 |
0 |
|
Term project presentation: |
0 |
0 |
|
Quiz: |
0 |
0 |
|
Own study for mid-term exam: |
2 |
7 |
|
Mid-term: |
3 |
2 |
|
Personal studies for final exam: |
2 |
7 |
|
Final exam: |
3 |
1 |
|
|
|
Total workload: |
|
|
|
Total ECTS credits: |
* |
|
* ECTS credit is calculated by dividing total workload by 25. (1 ECTS = 25 work hours)
|
|
|
-->