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Syllabus ( MBG 543 )


   Basic information
Course title: Marine Biotechnology
Course code: MBG 543
Lecturer: Assist. Prof. Sonay ÖZKAN
ECTS credits: 7.5
GTU credits: 3 (3+0+0)
Year, Semester: 1/2, Fall and Spring
Level of course: Second Cycle (Master's)
Type of course: Area Elective
Language of instruction: English
Mode of delivery: Face to face
Pre- and co-requisites: none
Professional practice: No
Purpose of the course: Teach students biotechnologically important chemical compounds from marine organisms, marine pharmocology, and culturing and gene manipulations in marine organisms.
   Learning outcomes Up

Upon successful completion of this course, students will be able to:

  1. Describe marine organisms and chemical compounds, and biotechnologically important marine products

    Contribution to Program Outcomes

    1. Define and manipulate advanced concepts of Biology
    2. Know and apply the techniques used in gene and protein engineering / microbial identification / enzyme technologies / mammalian cell culture and plant tissue culture manipulations.
    3. Acquire scientific knowledge and work independently,
    4. Work effectively in multi-disciplinary research teams
    5. Find out new methods to improve his/her knowledge.
    6. Effectively express his/her research ideas and findings both orally and in writing
    7. Demonstrate professional and ethical responsibility.

    Method of assessment

    1. Written exam
  2. List chemical compounds used in marine pharmacology, describe which compunds used for what type of disease, and biotechnological usage of each compunds

    Contribution to Program Outcomes

    1. Define and manipulate advanced concepts of Biology
    2. Identify structure-function relationships in cells and organisms
    3. Know and apply the techniques used in gene and protein engineering / microbial identification / enzyme technologies / mammalian cell culture and plant tissue culture manipulations.
    4. Work effectively in multi-disciplinary research teams
    5. Understand the applications and basic principles of new instrumentation and/or software vital to his/her thesis projects.
    6. Effectively express his/her research ideas and findings both orally and in writing
    7. Apply biological concepts to personal, social, economical, technological and ethical issues

    Method of assessment

    1. Written exam
    2. Homework assignment
  3. List culturable marine organisms, and grasp which chemical compunds synthesized from them.

    Contribution to Program Outcomes

    1. Define and manipulate advanced concepts of Biology
    2. Know and apply the techniques used in gene and protein engineering / microbial identification / enzyme technologies / mammalian cell culture and plant tissue culture manipulations.
    3. Acquire scientific knowledge and work independently,
    4. Find out new methods to improve his/her knowledge.
    5. Understand the applications and basic principles of new instrumentation and/or software vital to his/her thesis projects.
    6. Effectively express his/her research ideas and findings both orally and in writing
    7. Apply biological concepts to personal, social, economical, technological and ethical issues

    Method of assessment

    1. Written exam
  4. Apply methods for marine biotechnology

    Contribution to Program Outcomes

    1. Define and manipulate advanced concepts of Biology
    2. Know and apply the techniques used in gene and protein engineering / microbial identification / enzyme technologies / mammalian cell culture and plant tissue culture manipulations.
    3. Acquire scientific knowledge and work independently,
    4. Find out new methods to improve his/her knowledge.
    5. Understand the applications and basic principles of new instrumentation and/or software vital to his/her thesis projects.
    6. Effectively express his/her research ideas and findings both orally and in writing
    7. Apply biological concepts to personal, social, economical, technological and ethical issues

    Method of assessment

    1. Written exam
    2. Homework assignment
   Contents Up
Week 1: Screening for new metabolites from marine microorganisms.
DNA sequencing data from marine microorganisms, completed and uncompleted sequencing projects.
Examples of metabolites from marine microorganisms. Application of proteomics for analysis of targeted antibacterial compounds.
Fatty acids from lipids of marine organisms:
Molecular biodiversity, rules as biomarkers, biologically active compounds, and economical aspects.
Week 2: Fish and shellfish upgrading, traceability: Hydrolysates and last developments.
Marine microalgae: Metabolic engineering and production of useful chemicals from microalgae. Gene analysis of microalgae. Microalgal culture techniques.
Marine enzymes: Extremophyles and symbiotic marine microorganisms. Microorganisms from marine water and sediments. Molecular methods for identifying biological diversity.
Week 3: New biocatalysts and extreme environments as a resource for microorganisms. Microorganisms adapted to low and high temperatures, microorganisms living in extremely acidic environments, microorganisms tolerating extremely salted environments.
Week 4: Aquaculture of “non-food” organisms.
Week 5: Antifouling technologies.
Week 6: Downstream processing in marine biotechnology.
Data from biological processes for culturing of marine yeast and prokaryotes.
Bioprocess engineering data from marine mesophylic bacteria and yeast.
Week 7: Bioprocess engineering data from marine hyperthermophylic and barophylic Archaea.
Bioprocess engineering data.
General bioprocessing technologies.
Week 8: Midterm Exam
Week 9: Purification and isolation of enzymes. Processing of oligo and polysaccharides.
Isolation and purification of chitin and chitinosan. Isolation of fucoidan and fucoidanoses.
Week 10: Processing of unsaturated fatty acids. Processing of low molecular weight bioactive compounds.
Week 11: Marine pharmacology: potentialities in the treatment of infectious diseases, osteoporosis and Alzheimer’s disease.
Marine originated anti-tuberclosis agents. New anti-malarian agents originated from natural marine products. Zoantamin family as a potential anti-osteoporosis. Promising agent to treat Alzheimer’s disease.
Week 12: Asymmetric total synthesis of complex marine natural products. Examples from selected synthesis.
Week 13: Seafood allergy: lessons from clinical symptoms, immunological mechanisms and molecular biology. Applications and future steps.
Week 14: Reproductive biotechnology of shellfish and fin fishes. Transgenic animals. Methods in gene transfers. Production of transgenic fishes. Gene transfers in shellfish and fin fish. Development of fish strains. Transgenic fish models for identifying of environmental xenobiotics
Week 15*: Ethics and future aspects of aquatic biotechnology.
Week 16*: Final exam
Textbooks and materials: Marine Biotechnology handouts
Recommended readings: 1. Marine Biotechnology I. Advances in Biochemical Engineering /Biotechnology 96. Springer. Volume editors: Y. Le Gal and R. Ulber
2. Marine Biotechnology II. Advances in Biochemical Engineering /Biotechnology 97. Springer. Volume editors: Y. Le Gal and R. Ulber.
3. Biotechnology of Aquatic Animals. Editors: R. Nagabhushanam, A.D. Diwan, B.J. Zahuranec, R. Sarojini.
  * Between 15th and 16th weeks is there a free week for students to prepare for final exam.
Assessment Up
Method of assessment Week number Weight (%)
Mid-terms: 8 50
Other in-term studies: 0
Project: 0
Homework: 0
Quiz: 0
Final exam: 16 50
  Total weight:
(%)
   Workload Up
Activity Duration (Hours per week) Total number of weeks Total hours in term
Courses (Face-to-face teaching): 3 14
Own studies outside class: 4 14
Practice, Recitation: 0 0
Homework: 6 14
Term project: 0 0
Term project presentation: 0 0
Quiz: 0 0
Own study for mid-term exam: 0 0
Mid-term: 3 1
Personal studies for final exam: 0 0
Final exam: 3 1
    Total workload:
    Total ECTS credits:
*
  * ECTS credit is calculated by dividing total workload by 25.
(1 ECTS = 25 work hours)
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